| Species | Name Used in Reference |
|---|---|
| Gymnapogon annona (Whitley, 1936) | Gymnapogon annona (p. ) |
| Gymnapogon janus Fraser, 2016 | Gymnapogon janus (p. 433;fig.1-3) |
| Gymnapogon philippinus (Herre, 1939) | Gymnapogon philippinus (p. 435;) |
| Gymnapogon vanderbilti (Fowler, 1938) | Gymnapogon vanderbilti (p. ) |