| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chang-hwa | Sea/Bay/Gulf | native | 43515 |
| East China Sea | Sea/Bay/Gulf | native | 559 |
| Hsin-chu | Sea/Bay/Gulf | native | 43515 |
| Kuroshio Current | Sea/Bay/Gulf | native | 38029 |
| Pacific Ocean | Sea/Bay/Gulf | native | 559 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 559 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Tai-chung | Sea/Bay/Gulf | native | 43515 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Yellow Sea | Sea/Bay/Gulf | native | 559 |