| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | questionable | 45255 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Davao Gulf | Sea/Bay/Gulf | native | 45419 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48451 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | misidentification | 84159 |
| Shiliao River | River (basin) | native | 36073 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42419 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |