| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 2736 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Bay of Bengal | Sea/Bay/Gulf | native | 2109 |
| Bensbach River | River (basin) | native | 50786 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Erhjen River | River (basin) | native | 36073 |
| Euphrates and Tigris Delta | River (basin) | native | 115344 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 2109 |
| Indian Ocean | Sea/Bay/Gulf | native | 9812 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Kaoping River | River (basin) | native | 36073 |
| Kuroshio Current | Sea/Bay/Gulf | native | 9812 |
| Laguna de Bay | Lake | native | 13460 |
| Malacca Strait | Sea/Bay/Gulf | native | 121464 |
| Manila Bay | Sea/Bay/Gulf | native | 35686 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2109 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2109 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2109 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2736 |
| Palearctic | Zoogeographic realm | endemic | 7050 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| Polynesian Waters | Sea/Bay/Gulf | native | 2847 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Shihtsao River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 6956 |
| Taal Lake | Lake | native | 12165 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |