| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5493 |
| Australian | Zoogeographic realm | native | 6802 |
| Ethiopian | Zoogeographic realm | native | 13333 |
| Indian Ocean | Sea/Bay/Gulf | native | 6802 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Mekong | River (basin) | native | 12693 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6802 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6802 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6802 |
| Oriental | Zoogeographic realm | native | 4833 |
| Pacific Ocean | Sea/Bay/Gulf | native | 6802 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ruerhmen River | River (basin) | native | 36073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| Sikao Creek | River (basin) | native | 52823 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 5493 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Tsengwen River | River (basin) | native | 36073 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |