| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2295 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| East China Sea | Sea/Bay/Gulf | native | 11230 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 2295 |
| Indonesian Sea | Sea/Bay/Gulf | native | 2295 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2295 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 11230 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 2295 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2295 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |