| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea | Sea/Bay/Gulf | native | 75154 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 1602 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 75154 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Leeuwin | Sea/Bay/Gulf | native | 75154 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| Rapa-Pitcairn | Sea/Bay/Gulf | native | 41650 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Verde Island Passage | Sea/Bay/Gulf | native | 37603 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |