| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | native | 41590 |
| Chobe | River (basin) | native | 37065 |
| Congo | River (basin) | native | 7248 |
| Cuanza | River (basin) | native | 11970 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Kasai | River (basin) | native | 41590 |
| Linyanti Swamp | Lake | native | 37065 |
| Lower Zambezi | River (basin) | native | 95585 |
| Middle Congo | River (basin) | native | 95585 |
| Mweru | Lake | native | 95585 |
| Okavango | River (basin) | native | 52193 |
| Upper Lualaba | River (basin) | native | 41590 |
| Upper Zambezi | River (basin) | native | 95585 |
| Zambezi | River (basin) | native | 52193 |