| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 90102 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 90102 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Indonesian Sea | Sea/Bay/Gulf | native | 28618 |
| Leeuwin | Sea/Bay/Gulf | native | 75154 |
| Mekong | River (basin) | native | 87929 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Shark Bay | Sea/Bay/Gulf | native | 116003 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Tweed-Moreton | Sea/Bay/Gulf | native | 75154 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |