| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Kuroshio Current | Sea/Bay/Gulf | native | 48497 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4855 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Yellow Sea | Sea/Bay/Gulf | native | 4858 |