| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 4859 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Peru-Galapagos Waters | Sea/Bay/Gulf | native | 5227 |
| Polynesian Waters | Sea/Bay/Gulf | native | 4537 |
| Sarangani Bay | Sea/Bay/Gulf | native | 106380 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 12484 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 57038 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |