| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5222 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 4787 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48445 |
| Indian Ocean | Sea/Bay/Gulf | native | 4787 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5222 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 5222 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4787 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Polynesian Waters | Sea/Bay/Gulf | native | 4795 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 4787 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107853 |
| Yellow Sea | Sea/Bay/Gulf | native | 5222 |