| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arafura Sea | Sea/Bay/Gulf | native | 96973 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Manning-Hawkesbury | Sea/Bay/Gulf | native | 75154 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |