| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 87849 |
| Congo | River (basin) | endemic | 87849 |
| Ethiopian | Zoogeographic realm | endemic | 87849 |
| Léfini-Likouala | River (basin) | native | 86918 |
| Lindi-Tshopo | River (basin) | native | 87849 |
| Lomami | River (basin) | native | 87849 |
| Middle Congo | River (basin) | native | 87849 |
| Pool Malebo | Lake | native | 86918 |
| Ruki | River (basin) | questionable | 87849 |
| Wagenia Falls | River (basin) | native | 86918 |